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Getting Started

  • Overview
  • Supported Projects
  • Sample Manager Guide

Profiles

  • Choosing a Profile
  • Sharing Profiles
  • Sorting Profiles

Data Submissions

  • Uploading Data Files
  • Submitting Samples
  • Submitting Reads
  • Submitting Assemblies
  • Submitting Single-cell Data
  • Submitting Sequence Annotations
  • Submitting Barcoding Data
  • Submitting Images
  • Submitting Permits
  • Downloading Submitted Data
  • Publishing Data

Data Updates

  • Updating Profiles
  • Updating Submitted Data
  • Adding Child Projects to Parent Projects

Data Discovery & Retrieval

  • Data Templates and Instructions
  • Spreadsheet Wizard for Easy Data Submission
  • Finding Data Submission IDs
  • Tree of Life Dashboard
  • Submission Statistics
  • Using COPO Programmatically

Advanced

  • Local Setup Instructions
  • Understanding COPO’s Project Structure
  • Defining New Data Types
    • Adding Sample Types
    • Adding Other Data Types
  • Managing COPO Using Admin Tools

Policies

  • Citing this Documentation
  • COPO’s Approach to FAIR Data
  • Licence
  • Terms of Use
  • Privacy Notice
  • Contributor Code of Conduct

Help

  • Contact COPO
  • Frequently Asked Questions
  • Glossary

Research Outputs & Presentations

  • COPO Presentations
  • COPO Publications
COPO Project
  • Defining New Data Types
  • View page source

Defining New Data Types

  • Adding Sample Types
    • Overview
    • Step 1: Create an XML for new sample type
    • Step 2: Add XML file path to COPO project
    • Step 3: Persist new sample type to COPO
    • Examples of Sample Data Structure used in COPO
    • Related sections
  • Adding Other Data Types
    • Overview
    • Examples of Adding Other Types of Data in COPO
    • Extending existing checklist data
    • Update schema file version (optional)
    • Persist added data to COPO
    • Related sections
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© Copyright 2014-2026, Collaborative OPen Omics (COPO), Earlham Institute. Licensed under Apache License 2.0.

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