COPO Presentations
This section entails presentations and other materials that have been used to introduce COPO to various audiences.
Hint
Click the download link below to access the presentations
View the seminar presentations in slide show mode to see the animations.
Seminar presentations
-
Leveraging COPO to submit READ/Assembly/Sequencing Annotation data to ENA and get data published
Presented at the Earlham Institute internal seminar
Date: Tuesday 14th May, 2024
Presenter: Debby Ku, Research Software Engineer of the COPO team
-
- Abstract:
-
How users can leverage COPO to submit reads, assemblies and sequencing annotation data to European Nucleotide Archive (ENA) and get the data published
-
Advancing Biodiversity Research: The Evolution of Collaborative OPen Omics (COPO) Project
Presented at the Earlham Institute internal seminar
Date: Tuesday 23rd April, 2024
Presenter: Miss Aaliyah Providence, Junior Software Developer of the COPO team
-
- Abstract:
-
This seminar explores the evolution of the Collaborative OPen Omics (COPO) project as an open-source metadata broker in biodiversity research. With its capability to broker different data seamlessly, COPO has revolutionised the way by which researchers collaborate and share information.
An integral part of COPO’s development involves standardising as well as enriching metadata and enabling the integration of diverse datasets for publication to the European Nucleotide Archive (ENA) which facilitates public dissemination.
Additionally, COPO’s user-friendly Application Programming Interface (API) empowers users to query sample data efficiently, further enhancing accessibility and interoperability in biodiversity studies. Through its continuous evolution, COPO continues to drive innovation and collaboration in the field of bioscience research.
Poster presentations
-
Collaborative OPen Omics (COPO) - Building, Testing and Deployment
Authors: COPO team - Aaliyah Providence, Debby Ku and Felix Shaw
-
- Abstract:
-
Collaborative OPen Omics (COPO) is a user-friendly platform that allows scientists to easily upload, update, and publish metadata while adhering to community standards, promoting transparent data sharing. Built with cutting-edge technology, it utilises Docker Swarm for seamless service management, ensuring continuous availability, scalability, and ease of maintenance.
Security is prioritised in COPO’s architecture, with distinct network layers preventing direct client access to back-end data repositories. Docker secrets are employed to enforce strict measures against unauthorised access, enhancing data protection and platform integrity.
Overall, COPO provides a sophisticated solution for scientific data management, integrating modern methodologies and security protocols to facilitate collaborative research efforts and promote scientific advancement.
-
COPO - Bridging the Gap from Data to Publication in Plant Science
Authors: Felix Shaw, Anthony Etuk, Alejandra Gonzalez-Beltran, Phillipe Rocca-Serra, Alfie Abdul-Rahman, Paul Kersey, Ruth Bastow, Susanna Sansone, Robert Davey
-
- Abstract:
-
COPO streamlines the process of data deposition to public repositories by hiding much of the complexity of metadata capture and data management from the end-user. The ISA infrastructure (www.isa-tools.org) is leveraged to provide the interoperability between metadata formats required for seamless deposition to repositories and to facilitate links to data analysis platforms.
Logical groupings of artefacts (e.g. PDFs, raw data, contextual supplementary information) relating to a body of work are stored in COPO collections and represented by common standards, which are publicly searchable. Bundles of multiple data objects themselves can then be deposited directly into public repositories through COPO interfaces.
