:orphan:
.. _sample-update-notes:
Updating Samples: Important Notes
---------------------------------
.. note::
Updates follow the same process as initial submission but, some field
values cannot be changed. After the reuploaded manifest is successfully
validated, the |confirm-button| button will appear. Click it to apply the
changes.
Refer to :ref:`samples-submission` for more information.
* Samples must be uploaded before they can be updated.
* Not all sample fields can be updated using the reupload method. The fields
that can be updated are listed below (they are called *non-compliance*
fields). The fields that are not listed cannot be updated; they are known as
*compliance* fields [#f1]_. Click the |collapsible-item-arrow| icon to view
the list of updatable fields.
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* You **cannot** reupload a manifest [#f2]_ with some of the existing samples
removed. The removed samples (from the reuploaded manifest) will not be
automatically removed from the manifest sample record.
If you would like existing samples to be removed or deleted from the manifest
record, please contact the :email:`COPO team ` for
assistance detailing the profile title and reason for the removal.
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* If the manifest requires permits, the permits must be reuploaded before the
manifest update can be completed. The |confirm-button| button will appear
once the manifest validates successfully and the permits have been
reuploaded.
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* The **Confirm** button will **not appear** if a manifest requires permits and
the permits have not been reuploaded. The permits **must** be reuploaded in
order for the **Confirm** button to appear when updating samples within a
manifest. See the
:ref:`Confirm button missing after manifest update and validation
`
:abbr:`FAQ (Frequently Asked Question)` for insights.
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.. collapse:: Updatable fields for Aquatic Symbiosis Genomics (ASG) projects
.. hlist::
:columns: 2
* BARCODE_HUB
* BARCODE_PLATE_PRESERVATIVE
* COLLECTOR_SAMPLE_ID
* CULTURE_OR_STRAIN_ID
* DATE_OF_PRESERVATION
* DEPTH
* DIFFICULT_OR_HIGH_PRIORITY_SAMPLE
* ELEVATION
* HAZARD_GROUP
* IDENTIFIED_BY
* IDENTIFIED_HOW
* IDENTIFIER_AFFILIATION
* INFRASPECIFIC_EPITHET
* LIFESTAGE
* PARTNER_SAMPLE_ID
* PLATE_ID_FOR_BARCODING
* PRESERVED_BY
* PRESERVER_AFFILIATION
* PURPOSE_OF_SPECIMEN
* RELATIONSHIP
* SEX
* SIZE_OF_TISSUE_IN_TUBE
* SPECIMEN_ID_RISK
* TIME_ELAPSED_FROM_COLLECTION_TO_PRESERVATION
* TIME_OF_COLLECTION
* TISSUE_FOR_BARCODING
* TISSUE_REMOVED_FOR_BARCODING
* TUBE_OR_WELL_ID_FOR_BARCODING
* VOUCHER_ID
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.. collapse:: Updatable fields for Darwin Tree of Life (DToL) projects
.. hlist::
:columns: 2
* BARCODE_HUB
* BARCODE_PLATE_PRESERVATIVE
* COLLECTOR_SAMPLE_ID
* CULTURE_OR_STRAIN_ID
* DATE_OF_PRESERVATION
* DEPTH
* DIFFICULT_OR_HIGH_PRIORITY_SAMPLE
* ELEVATION
* GAL_SAMPLE_ID
* HAZARD_GROUP
* IDENTIFIED_BY
* IDENTIFIED_HOW
* IDENTIFIER_AFFILIATION
* INFRASPECIFIC_EPITHET
* LIFESTAGE
* PLATE_ID_FOR_BARCODING
* PRESERVED_BY
* PRESERVER_AFFILIATION
* PURPOSE_OF_SPECIMEN
* RELATIONSHIP
* SEX
* SIZE_OF_TISSUE_IN_TUBE
* SPECIMEN_IDENTITY_RISK
* TIME_ELAPSED_FROM_COLLECTION_TO_PRESERVATION
* TIME_OF_COLLECTION
* TISSUE_FOR_BARCODING
* TISSUE_REMOVED_FOR_BARCODING
* TUBE_OR_WELL_ID_FOR_BARCODING
* VOUCHER_ID
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.. collapse:: Updatable fields for European Reference Genome Atlas (ERGA)
projects
.. hlist::
:columns: 1
* ASSOCIATED_TRADITIONAL_KNOWLEDGE_CONTACT
* ASSOCIATED_TRADITIONAL_KNOWLEDGE_OR_BIOCULTURAL_PROJECT_ID
* ASSOCIATED_TRADITIONAL_KNOWLEDGE_OR_BIOCULTURAL_RIGHTS_APPLICABLE
* BARCODE_HUB
* BARCODING_STATUS
* BARCODE_PLATE_PRESERVATIVE
* BIOBANKED_TISSUE_PRESERVATIVE
* COLLECTED_BY
* COLLECTION_LOCATION
* COLLECTOR_AFFILIATION
* COLLECTOR_SAMPLE_ID
* COMMON_NAME
* CULTURE_OR_STRAIN_ID
* DATE_OF_COLLECTION
* DATE_OF_PRESERVATION
* DECIMAL_LATITUDE
* DECIMAL_LONGITUDE
* DEPTH
* DESCRIPTION_OF_COLLECTION_METHOD
* DIFFICULT_OR_HIGH_PRIORITY_SAMPLE
* DNA_REMOVED_FOR_BIOBANKING
* DNA_VOUCHER_ID_FOR_BIOBANKING
* ELEVATION
* ETHICS_PERMITS_DEF
* ETHICS_PERMITS_FILENAME
* ETHICS_PERMITS_REQUIRED
* FAMILY
* GAL
* GAL_SAMPLE_ID
* GENUS
* GRID_REFERENCE
* HABITAT
* HAZARD_GROUP
* IDENTIFIED_BY
* IDENTIFIED_HOW
* IDENTIFIER_AFFILIATION
* IDENTIFIER_AFFILIATION
* INDIGENOUS_RIGHTS_APPLICABLE
* INDIGENOUS_RIGHTS_DEF
* INDIGENOUS_RIGHTS_DEF
* INFRASPECIFIC_EPITHET
* LIFESTAGE
* NAGOYA_PERMITS_DEF
* NAGOYA_PERMITS_FILENAME
* NAGOYA_PERMITS_REQUIRED
* ORDER_OR_GROUP
* ORGANISM_PART
* ORIGINAL_COLLECTION_DATE
* ORIGINAL_GEOGRAPHIC_LOCATION
* OTHER_INFORMATION
* PRESERVATION_APPROACH
* PRESERVATIVE_SOLUTION
* PRESERVED_BY
* PRESERVER_AFFILIATION
* PROXY_TISSUE_VOUCHER_ID_FOR_BIOBANKING
* PROXY_VOUCHER_ID
* PROXY_VOUCHER_LINK
* PURPOSE_OF_SPECIMEN
* REGULATORY_COMPLIANCE
* RELATIONSHIP
* SAMPLE_COORDINATOR
* SAMPLE_COORDINATOR_AFFILIATION
* SAMPLE_COORDINATOR_ORCID_ID
* SAMPLING_PERMITS_FILENAME
* SAMPLING_PERMITS_REQUIRED
* SCIENTIFIC_NAME
* SEX
* SIZE_OF_TISSUE_IN_TUBE
* SPECIMEN_IDENTITY_RISK
* TAXON_ID
* TAXON_REMARKS
* TIME_ELAPSED_FROM_COLLECTION_TO_PRESERVATION
* TIME_OF_COLLECTION
* TISSUE_FOR_BARCODING
* TISSUE_FOR_BIOBANKING
* TISSUE_REMOVED_FOR_BARCODING
* TISSUE_REMOVED_FOR_BIOBANKING
* TISSUE_REMOVED_FROM_BARCODING
* TISSUE_VOUCHER_ID_FOR_BIOBANKING
* TUBE_OR_WELL_ID_FOR_BARCODING
* VOUCHER_ID
* VOUCHER_INSTITUTION
* VOUCHER_LINK
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Related Topics
~~~~~~~~~~~~~~
* :ref:`data-download`
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.. rubric:: Footnotes
.. [#f1] See term: :term:`Compliance field`.
.. [#f2] See term: :term:`Manifest`.
..
Images declaration
..
.. |collapsible-item-arrow| image:: /assets/images/icons/arrow-right.png
:height: 2ex
:class: no-scaled-link
.. |confirm-button| image:: /assets/images/buttons/confirm-button.png
:height: 4ex
:class: no-scaled-link